Package: PhenotypeSpace 0.1.1
PhenotypeSpace: Quantifying phenotypic spaces
Facilitates quantifying phenotypic trait spaces and comparing spaces across groups.
Authors:
PhenotypeSpace_0.1.1.tar.gz
PhenotypeSpace_0.1.1.zip(r-4.7)PhenotypeSpace_0.1.1.zip(r-4.6)PhenotypeSpace_0.1.1.zip(r-4.5)
PhenotypeSpace_0.1.1.tgz(r-4.6-any)PhenotypeSpace_0.1.1.tgz(r-4.5-any)
PhenotypeSpace_0.1.1.tar.gz(r-4.7-any)PhenotypeSpace_0.1.1.tar.gz(r-4.6-any)
PhenotypeSpace_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PhenotypeSpace/json (API)
NEWS
| # Install 'PhenotypeSpace' in R: |
| install.packages('PhenotypeSpace', repos = c('https://marce10.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/marce10/phenotypespace/issues
Pkgdown/docs site:https://marce10.github.io
- example_space - Example bi-dimensional space data
Last updated from:6e3b9a80b3. Checks:7 ERROR, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 259 | ||
| source / vignettes | OK | 243 | ||
| linux-release-x86_64 | ERROR | 282 | ||
| macos-release-arm64 | ERROR | 204 | ||
| macos-oldrel-arm64 | ERROR | 152 | ||
| windows-devel | ERROR | 231 | ||
| windows-release | ERROR | 214 | ||
| windows-oldrel | ERROR | 236 | ||
| wasm-release | OK | 163 |
Exports:binary_triangular_matrixdistance_to_rectangularplot_spacerarefact_space_similarityrarefact_space_sizerarefact_space_size_differencerectangular_to_triangularspace_similarityspace_sizespace_size_difference
Dependencies:abindade4adehabitatHRadehabitatLTadehabitatMAclassclassIntcliclustercpp11DBIdeldire1071farverggplot2gluegoftestgridExtragtableisobandKernSmoothlabelinglatticelifecycleMASSMatrixmgcvnicheROVERnlmepbapplypermutepixmappolyclipproxyR6rasterRColorBrewerRcppRcppArmadillorlangs2S7scalessfspspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilstensorterraunitsvctrsveganviridisviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get binary triangular matrices | binary_triangular_matrix |
| Convert pairwise distance matrices to rectangular matrices | distance_to_rectangular |
| Example bi-dimensional space data | example_space |
| Plot bidimensional trait spaces | plot_space |
| Calculates rarefacted space overlaps | rarefact_space_similarity |
| Estimates rarefacted size of phenotypic spaces | rarefact_space_size |
| Calculates rarefacted space size differences | rarefact_space_size_difference |
| Convert rectangular pairwise matrices to triangular matrices | rectangular_to_triangular |
| Pairwise similarities of phenotype spaces | space_similarity |
| Estimates the size of phenotypic spaces | space_size |
| Estimates pairwise size differences of phenotypic spaces | space_size_difference |
