{ "_id": "6a50c0e389c83ec243a304fe", "Package": "PhenotypeSpace", "Type": "Package", "Title": "Quantifying phenotypic spaces", "Version": "0.1.1", "Author": "Marcelo Araya-Salas, Karan Odom & Alejandro Rico-Guevara", "Maintainer": "Marcelo Araya-Salas ", "Description": "Facilitates quantifying phenotypic trait spaces and\ncomparing spaces across groups.", "License": "GPL (>= 2)", "Encoding": "UTF-8", "URL": "https://marce10.github.io/PhenotypeSpace/", "BugReports": "https://github.com/maRce10/PhenotypeSpace/issues/", "RoxygenNote": "7.3.2", "Language": "en-US", "Authors@R": "c(person(\"Marcelo\", \"Araya-Salas\",\nrole = c(\"aut\", \"cre\"),\nemail = \"marcelo.araya@ucr.ac.cr\",\ncomment = c(ORCID = \"0000-0003-3594-619X\")),\nperson(\"Karan\", \"Odom\",\nrole = c(\"aut\"),\nemail = \"kjodom@gmail.com\",\ncomment = c(ORCID = \"0000-0002-9074-135X\")),\nperson(\"Alejandro\", \"Rico-Guevara\",\nrole = c(\"aut\"),\nemail = \"colibri@uw.edu\",\ncomment = c(ORCID = \"0000-0003-4067-5312\")))", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibssl-dev libproj-dev libsqlite3-dev libudunits2-dev", "Repository": "https://marce10.r-universe.dev", "Date/Publication": "2026-04-11 00:02:06 UTC", "RemoteUrl": "https://github.com/maRce10/PhenotypeSpace", "RemoteRef": "HEAD", "RemoteSha": "6e3b9a80b3003494449730fc400ba0e86e554300", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-10 09:46:37 UTC", "User": "root" }, "_user": "marce10", "_type": "src", "_file": "PhenotypeSpace_0.1.1.tar.gz", "_fileid": "https://r2.ropensci.org/dbc9ad27547607dfd37df4b51db5d6d34f6dddd291f6f55b5624ac4520d16325", "_filesize": 449471, "_sha256": "dbc9ad27547607dfd37df4b51db5d6d34f6dddd291f6f55b5624ac4520d16325", "_expires": "2026-10-18T09:52:33.000Z", "_created": "2026-07-10T09:46:37.000Z", "_published": "2026-07-10T09:52:35.765Z", "_jobs": [ { "job": 86333947794, "time": 295, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "8224132427" }, { "job": 86333947777, "time": 299, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "8224132848" }, { "job": 86333947800, "time": 171, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "8224086341" }, { "job": 86333947884, "time": 147, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "8224077803" }, { "job": 86333080489, "time": 285, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8224022130" }, { "job": 86333947799, "time": 169, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8224085700" }, { "job": 86333947895, "time": 248, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "8224115405" }, { "job": 86333947904, "time": 241, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "8224112783" }, { "job": 86333947842, "time": 229, "config": "windows-release", "r": "4.6.1", "check": "ERROR", "artifact": "8224107708" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168", "_status": "success", "_upstream": "https://github.com/maRce10/PhenotypeSpace", "_commit": { "id": "6e3b9a80b3003494449730fc400ba0e86e554300", "author": "Marcelo Araya-Salas ", "committer": "Marcelo Araya-Salas ", "message": "fix space_similarity\n", "time": 1775865726 }, "_maintainer": { "name": "Marcelo Araya-Salas", "email": "marcelo.araya@ucr.ac.cr", "login": "marce10", "description": "I am an evolutionary behavioral ecologist and scientific programmer/software developer 🇨🇷", "uuid": 13245502, "orcid": "0000-0003-3594-619X" }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0.0", "role": "Depends" }, { "package": "pbapply", "role": "Imports" }, { "package": "viridis", "role": "Imports" }, { "package": "adehabitatHR", "role": "Imports" }, { "package": "sp", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "raster", "role": "Imports" }, { "package": "MASS", "role": "Imports" }, { "package": "vegan", "role": "Imports" }, { "package": "spatstat.explore", "role": "Imports" }, { "package": "spatstat.geom", "role": "Imports" }, { "package": "proxy", "role": "Imports" }, { "package": "grDevices", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "sf", "role": "Imports" }, { "package": "nicheROVER", "role": "Imports" }, { "package": "caret", "role": "Suggests" }, { "package": "randomForest", "role": "Suggests" }, { "package": "C50", "role": "Suggests" }, { "package": "plotly", "role": "Suggests" } ], "_owner": "marce10", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-30", "n": 1 }, { "week": "2025-45", "n": 2 }, { "week": "2026-06", "n": 2 }, { "week": "2026-15", "n": 1 } ], "_tags": [], "_topics": [ "phenotype", "quantitative-metrics" ], "_stars": 2, "_contributors": [ { "user": "marce10", "count": 48, "uuid": 13245502 } ], "_userbio": { "uuid": 13245502, "type": "user", "name": "Marcelo Araya-Salas", "followers": 73, "description": "I am an evolutionary behavioral ecologist and scientific programmer/software developer 🇨🇷" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/PhenotypeSpace" }, "_devurl": "https://github.com/marce10/phenotypespace", "_pkgdown": "https://marce10.github.io/PhenotypeSpace/", "_searchresults": 17, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/PhenotypeSpace.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "binary_triangular_matrix", "distance_to_rectangular", "plot_space", "rarefact_space_similarity", "rarefact_space_size", "rarefact_space_size_difference", "rectangular_to_triangular", "space_similarity", "space_size", "space_size_difference" ], "_datasets": [ { "name": "example_space", "title": "Example bi-dimensional space data", "object": "example_space", "file": "example_space.rda", "class": [ "data.frame" ], "fields": [ "group", "dimension_1", "dimension_2", "dimension_3", "color" ], "rows": 1550, "table": true, "tojson": true } ], "_help": [ { "page": "binary_triangular_matrix", "title": "Get binary triangular matrices", "topics": [ "binary_triangular_matrix" ] }, { "page": "distance_to_rectangular", "title": "Convert pairwise distance matrices to rectangular matrices", "topics": [ "distance_to_rectangular" ] }, { "page": "example_space", "title": "Example bi-dimensional space data", "topics": [ "example_space" ] }, { "page": "plot_space", "title": "Plot bidimensional trait spaces", "topics": [ "plot_space" ] }, { "page": "rarefact_space_similarity", "title": "Calculates rarefacted space overlaps", "topics": [ "rarefact_space_similarity" ] }, { "page": "rarefact_space_size", "title": "Estimates rarefacted size of phenotypic spaces", "topics": [ "rarefact_space_size" ] }, { "page": "rarefact_space_size_difference", "title": "Calculates rarefacted space size differences", "topics": [ "rarefact_space_size_difference" ] }, { "page": "rectangular_to_triangular", "title": "Convert rectangular pairwise matrices to triangular matrices", "topics": [ "rectangular_to_triangular" ] }, { "page": "space_similarity", "title": "Pairwise similarities of phenotype spaces", "topics": [ "space_similarity" ] }, { "page": "space_size", "title": "Estimates the size of phenotypic spaces", "topics": [ "space_size" ] }, { "page": "space_size_difference", "title": "Estimates pairwise size differences of phenotypic spaces", "topics": [ "space_size_difference" ] } ], "_readme": "https://github.com/maRce10/PhenotypeSpace/raw/HEAD/README.md", "_rundeps": [ "abind", "ade4", "adehabitatHR", "adehabitatLT", "adehabitatMA", "class", "classInt", "cli", "cluster", "cpp11", "DBI", "deldir", "e1071", "farver", "ggplot2", "glue", "goftest", "gridExtra", "gtable", "isoband", "KernSmooth", "labeling", "lattice", "lifecycle", "MASS", "Matrix", "mgcv", "nicheROVER", "nlme", "pbapply", "permute", "pixmap", "polyclip", "proxy", "R6", "raster", "RColorBrewer", "Rcpp", "RcppArmadillo", "rlang", "s2", "S7", "scales", "sf", "sp", "spatstat.data", "spatstat.explore", "spatstat.geom", "spatstat.random", "spatstat.sparse", "spatstat.univar", "spatstat.utils", "tensor", "terra", "units", "vctrs", "vegan", "viridis", "viridisLite", "withr", "wk" ], "_score": 2.832508912706236, "_indexed": true, "_nocasepkg": "phenotypespace", "_universes": [ "marce10" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1", "date": "2026-07-10T09:49:49.000Z", "distro": "resolute", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/7c15e7cd8b853176891aada01fd75968759ce6b37bdbb7d88d0e5d0ce6505cbe", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1", "date": "2026-07-10T09:49:51.000Z", "distro": "resolute", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/a52b0463a115a3bf18a77c458bfd76436f3fee7cdf2229dc04a6256fe61754a2", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1", "date": "2026-07-10T09:48:40.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/747e2017618c14a033b0f099e57d8dd26d5afcc8f75bed937f5a68bb52123497", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1", "date": "2026-07-10T09:48:29.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/3640bb0f77225c321f0b7016f3850896ea4231c2f7174a16191d641716ffedb6", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1", "date": "2026-07-10T09:49:57.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/d111071be722a8c576ebc09589ed13edd5840d0c30ca42319d3f9712dc7f6685", "status": "success", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.7.0", "os": "win", "version": "0.1.1", "date": "2026-07-10T09:48:48.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/19422eefd2405ea6ae664222292b5e0289ac7aeaa7d1e168e7d754da2d79ea5d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.5.3", "os": "win", "version": "0.1.1", "date": "2026-07-10T09:48:38.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/6888b923d6d876f373378fa5f8ee5a860c2d1704da1921d8bc4acdcfbaf30d1f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" }, { "r": "4.6.1", "os": "win", "version": "0.1.1", "date": "2026-07-10T09:48:21.000Z", "commit": "6e3b9a80b3003494449730fc400ba0e86e554300", "fileid": "https://r2.ropensci.org/04e97c0e4d2a220d7a6ff113014ba84822bd8b3c547ebf2f8413d83fb2a8a7fe", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/marce10/actions/runs/29083917168" } ] }