warbleR - Streamline Bioacoustic Analysis
Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. 'warbleR' makes use of the basic sound analysis tools from the packages 'tuneR' and 'seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
Last updated
animal-acoustic-signalsaudio-processingbioacousticsspectrogramstreamline-analysiscpp
10.89 score 62 stars 4 dependents 360 scripts 732 downloads
suwo - Access Nature Media Repositories
Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
Last updated
7.23 score 9 stars 27 scripts 588 downloadsohun - Optimizing Acoustic Signal Detection
Facilitates the automatic detection of acoustic signals, providing functions to diagnose and optimize the performance of detection routines. Detections from other software can also be explored and optimized. This package has been peer-reviewed by rOpenSci. Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
Last updated
audio-processingbioacousticssound-event-detectionspectrogramstreamline-analysis
7.04 score 18 stars 1 dependents 45 scripts 302 downloadsohun - Optimizing Acoustic Signal Detection
Facilitates the automatic detection of acoustic signals, providing functions to diagnose and optimize the performance of detection routines. Detections from other software can also be explored and optimized. This package has been peer-reviewed by rOpenSci. Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
Last updated
audio-processingbioacousticssound-event-detectionspectrogramstreamline-analysis
7.04 score 18 stars 1 dependents 45 scripts 317 downloadsbaRulho - Quantifying (Animal) Sound Degradation
Intended to facilitate acoustic analysis of (animal) sound propagation experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
Last updated
acoustic-signalsanimalbehaviorbioacoustics
6.60 score 10 stars 22 scripts 346 downloadsbaRulho - Quantifying (Animal) Sound Degradation
Intended to facilitate acoustic analysis of (animal) sound propagation experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
Last updated
acoustic-signalsanimalbehaviorbioacoustics
6.60 score 10 stars 22 scripts 323 downloadsRraven - Connecting R and 'Raven' Sound Analysis Software
A tool to exchange data between R and 'Raven' sound analysis software (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
Last updated
animalravensounds
6.50 score 12 stars 66 scripts 341 downloads
suwo - Access Nature Media Repositories
Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
Last updated
6.23 score 9 stars 27 scripts 588 downloadsdynaSpec - Dynamic Spectrogram Visualizations
A set of tools to generate dynamic spectrogram visualizations in video format.
Last updated
animal-soundsbioacousticsspectrogram
5.32 score 25 stars 42 scripts 238 downloadssketchy - Create Custom Research Compendiums
Provides functions to create and manage research compendiums for data analysis. Research compendiums are a standard and intuitive folder structure for organizing the digital materials of a research project, which can significantly improve reproducibility. The package offers several compendium structure options that fit different research project as well as the ability of duplicating the folder structure of existing projects or implementing custom structures. It also simplifies the use of version control.
Last updated
compendiumresearch
3.86 score 3 stars 16 scripts 201 downloadsPhenotypeSpace - Quantifying phenotypic spaces
Facilitates quantifying phenotypic trait spaces and comparing spaces across groups.
Last updated
phenotypequantitative-metrics
2.92 score 2 stars 14 scripts