warbleR - Streamline Bioacoustic Analysis
Functions aiming to facilitate the analysis of the structure of animal acoustic signals in 'R'. 'warbleR' makes use of the basic sound analysis tools from the packages 'tuneR' and 'seewave', and offers new tools for exploring and quantifying acoustic signal structure. The package allows to organize and manipulate multiple sound files, create spectrograms of complete recordings or individual signals in different formats, run several measures of acoustic structure, and characterize different structural levels in acoustic signals (Araya-Salas et al 2016 <doi:10.1111/2041-210X.12624>).
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animal-acoustic-signalsaudio-processingbioacousticsspectrogramstreamline-analysiscpp
10.88 score 62 stars 4 dependents 402 scripts 864 downloads
suwo - Access Nature Media Repositories
Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
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7.22 score 9 stars 28 scripts 501 downloadsohun - Optimizing Acoustic Signal Detection
Facilitates the automatic detection of acoustic signals, providing functions to diagnose and optimize the performance of detection routines. Detections from other software can also be explored and optimized. This package has been peer-reviewed by rOpenSci. Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
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audio-processingbioacousticssound-event-detectionspectrogramstreamline-analysis
7.15 score 18 stars 1 dependents 58 scripts 351 downloadsohun - Optimizing Acoustic Signal Detection
Facilitates the automatic detection of acoustic signals, providing functions to diagnose and optimize the performance of detection routines. Detections from other software can also be explored and optimized. This package has been peer-reviewed by rOpenSci. Araya-Salas et al. (2022) <doi:10.1101/2022.12.13.520253>.
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audio-processingbioacousticssound-event-detectionspectrogramstreamline-analysis
7.15 score 18 stars 1 dependents 58 scripts 328 downloadsbaRulho - Quantifying (Animal) Sound Degradation
Intended to facilitate acoustic analysis of (animal) sound propagation experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
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acoustic-signalsanimalbehaviorbioacoustics
6.48 score 10 stars 25 scripts 446 downloadsbaRulho - Quantifying (Animal) Sound Degradation
Intended to facilitate acoustic analysis of (animal) sound propagation experiments, which typically aim to quantify changes in signal structure when transmitted in a given habitat by broadcasting and re-recording animal sounds at increasing distances. The package offers a workflow with functions to prepare the data set for analysis as well as to calculate and visualize several degradation metrics, including blur ratio, signal-to-noise ratio, excess attenuation and envelope correlation among others (Dabelsteen et al 1993 <doi:10.1121/1.406682>).
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acoustic-signalsanimalbehaviorbioacoustics
6.48 score 10 stars 25 scripts 393 downloadsRraven - Connecting R and 'Raven' Sound Analysis Software
A tool to exchange data between R and 'Raven' sound analysis software (Cornell Lab of Ornithology). Functions work on data formats compatible with the R package 'warbleR'.
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animalravensounds
6.40 score 12 stars 69 scripts 429 downloads
suwo - Access Nature Media Repositories
Streamline searching, downloading and formatting of nature media files (e.g. audios, photos) from online repositories. The package offers functions for obtaining media metadata from online repositories, downloading associated media files and updating data sets with new records.
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6.23 score 9 stars 28 scripts 493 downloadsdynaSpec - Dynamic Spectrogram Visualizations
A set of tools to generate dynamic spectrogram visualizations in video format.
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animal-soundsbioacousticsspectrogram
5.03 score 25 stars 43 scripts 388 downloadssketchy - Create Custom Research Compendiums
Provides functions to create and manage research compendiums for data analysis. Research compendiums are a standard and intuitive folder structure for organizing the digital materials of a research project, which can significantly improve reproducibility. The package offers several compendium structure options that fit different research project as well as the ability of duplicating the folder structure of existing projects or implementing custom structures. It also simplifies the use of version control.
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compendiumresearch
3.93 score 3 stars 19 scripts 277 downloadsPhenotypeSpace - Quantifying phenotypic spaces
Facilitates quantifying phenotypic trait spaces and comparing spaces across groups.
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phenotypequantitative-metrics
2.83 score 2 stars 17 scripts