make_compendium(): a quarto website (in 'scripts/') that is rendered and published on GitHub Pages by a GitHub action ('.github/workflows/publish.yml'). It also includes 'manuscript' and 'archive' folders. With renv = TRUE the GitHub action installs the packages in 'renv.lock', so pages don't need to be rendered locally before publishingspot_unused_files() can remove empty folders
load_packages() now installs packages with 'pak' (instead of 'remotes', no longer a dependency), accepting pak package specifications (e.g. "bioc::ggtree", "user/[email protected]") in addition to the vector-name syntax. It gains argument quiet (quite is deprecated), returns (invisibly) which packages were loaded and validates repository names
The Rmarkdown analysis template adds copy buttons to code blocks with a small script, so 'xaringanExtra' is no longer needed (and no longer a dependency of sketchy)
load_packages() is superseded: it keeps working, but the docs recommend pak::pkg_install() + library() (no dependency on 'sketchy') and make_compendium(renv = TRUE)
Analysis and manuscript templates install/load packages with 'pak' (the manuscript template no longer removes packages that fail to load). Packages are loaded before setting chunk options, so options that need packages (e.g. 'tidy' needs 'formatR') work on first render and base R, so projects no longer depend on 'sketchy' and stop with a clear message listing the packages that could not be installed
make_compendium() gains argument renv to initialize renv (records package versions in 'renv.lock'). Argument packrat is deprecated (packrat has been superseded by renv) and now initializes renv; 'packrat' is no longer a dependency
spot_unused_files() archives files into "archive" (within 'path') keeping their sub-folder structure
print_skeleton() now uses cli::tree() to draw the folder tree, accepts comments for only some folders (named vector) and returns the tree invisibly. When folders is supplied, path is used as the label of the root folder Package no longer depends on stringi
Package citation now in citation("sketchy") (inst/CITATION), always matching the installed version
Tests added (testthat)
Name of project is added to the subtitle of Rmarkdown/quarto files in make_compendium()
make_compendium(format = "sketchy") wrote an empty Rmarkdown analysis template (internal data was out of date). Internal data can now be rebuilt from 'examples/' with 'data-raw/internal_data.R'
make_compendium() failed when called as sketchy::make_compendium() without attaching the package
print_skeleton() and make_compendium(clone = ...) ignored any folder starting with '.git' (e.g. '.github')
load_packages() no longer uninstalls packages that fail to load, passes 'quiet' correctly to 'remotes' and only reports packages that failed
add_to_gitignore() keeps the relative path of files in sub-folders (instead of only the file name), prints the right message when only 'extension' is supplied and no longer treats '.gitignore' entries as regular expressions
spot_unused_files() archived files relative to the working directory instead of 'path', and remove.empty = TRUE could delete empty folders inside '.git'
make_compendium() could pick up a 'comments_vector' object from the global environment and failed when cloning with the default 'format'
open_wd() failed with paths containing spaces
Fixed examples in print_skeleton() and check_urls()
add_to_gitignore()New function spot_unused_files() to spot/remove unused files in a project directory
New function open_wd() to open the current working directory
make_compendium()check_urls() to check url addresses